Showing posts with label antibiotic resistance. Show all posts
Showing posts with label antibiotic resistance. Show all posts

Friday, March 8, 2019

What Does a Scientist Do When He or She Gets Sick?


I mean, besides griping and whining like everyone else. And feeling embarrassed for sneezing in front of a class. And I don’t mean an ordinary sneeze. I mean a convulsive one that makes me bend over double, one that is uncontrollable, and which makes me invent new consonants. Red Skelton did a comedy routine about this once.

What do we scientists do when we get sick? We test a series of hypotheses, that’s what. It keeps our minds occupied even though we may never find out which hypothesis, if any, might be true.

When I became sick over a month ago, I tried to figure out what it was. I first assumed it was allergies. Allergies are famous in Oklahoma. I got a severe sore throat one night, assumed it was a cold, Hypothesis 1, but it was gone the next day, to be replaced by all the usual symptoms of either an allergy or a cold. Lots of other people had the same experience on the same day, which just happened to be the day the rain stopped and a strong wind came from the south during cedar pollen season (Juniperus ashei, abundant in Texas). How likely was it that I had an infection when everybody else had allergies? The rain came back and our windshields ran yellow with cedar and elm pollen. That was hypothesis 2: allergic reaction.

But it didn’t go away. I assumed that Hypothesis 1 had been correct. But nine days later, I still had this cold. Maybe, I thought, it was a bacterial infection, Hypothesis 3. Maybe the allergic reaction weakened my immune system, making me vulnerable to bacteria that I already harbored and which had been waiting their chance to invade me. Evidence: yellow snot. Not just from breathing pollen, but even when the pollen had been rinsed away by more rain.

Ten days of amoxicillin seemed to help. At least my sense of taste returned. But my cough and congestion continued. I went to the clinic again. My snot was now clear, so the conclusion was that Hypothesis 2 had been correct, and I got an allergy shot.

By the beginning of the fourth week of whatever-the-hell, I was beginning to think of bacteria again, because the allergy shot brought no relief. I thought it was working, but this was bias on the part of my brain. My snot was yellow again, and there were the convulsive coughs, along with abdominal muscle pains just from the coughing. I have already used more tissues than I typically do in two or three years. But this is Hypothesis 4: amoxicillin-resistant bacteria.

Antibiotic-resistant bacteria kill thousands of people. They are the premier example of the statement I used in my encyclopedia: What you don’t know about evolution can kill you. If I had not studied evolutionary medicine, I might never have thought of Hypothesis 4. Most infections, even bacterial ones, are self-limiting, which means you eventually get over them in a few months or decades. But I have too much life that I want to finish before I die, so I hope it doesn’t take this long. And recovery is not guaranteed. Weep not for me, gentle friends, but for the books I will not have a chance to publish unless I recover.

As of this posting, the second-line antibiotic seems to be working. If it does not, I hereby authorize my heirs to post a notice on this blog.

I was in the mood for hypothesis testing because I was reading This Is Biology: The Science of the Living World, by the late great Ernst Mayr. He wrote the book when he was 92 years old; he died at age 100 in 2004. It is thick with information, but pleasantly written (even with a joke or two), and I could relax in the assurance that he had figured out the philosophy of science so that I did not have to. He was not a great fan of philosophers; during the height of Karl Popper’s popularity, he said that every scientist he knew claimed he or she was a Popperian and then went ahead and did whatever he or she was going to do anyway. If I did not have to sit at home, I might never have looked at this book.

Hypothesis testing helps us understand reality, but it also helps take our minds away from the reality that would depress us.

Friday, December 11, 2015

New Video

Find out why on YouTube Darwin's favorite magazine is the Morbidity and Mortality Weekly Report! What you don't know about evolution can kill you!

Saturday, March 7, 2015

Another Reason to be Healthy

We can all think of lots of reasons to pursue a healthy lifestyle. This includes precautions to avoid being exposed to germs, as well as to keep ourselves from being susceptible to them. Rest, exercise, good food, and avoidance of stress (if only partially) help to keep us from being susceptible. Of course, flu shots help (this year, only a little).

But there is another reason, one that involves altruism, and doing something for the benefit of the whole society (and ourselves as well). The overuse of antibiotics has led to the evolution of antibiotic-resistant bacteria, including some of them (superbugs) resistant to more than one class of antibiotics. Most people who read this blog know that this is evolution, not just a metaphor of it.

Doctors are supposed to do their part by prescribing antibiotics only to patients with some clear indication of bacterial infection, as antibiotics are ineffective against viruses. That is, it is their job to reduce the total number of unnecessary antibiotic prescriptions. But they have to prescribe antibiotics for bacterial infections. And here is where we can do our part. If we reduce the total number of bacterial infections that we get, through lifestyle, then we are reducing the total number of necessary antibiotic prescriptions. The result is less evolution of resistance, which means the antibiotics that we have will be more effective for the people who need them.


Time to go home and eat some broccoli.

Monday, July 18, 2011

What You Don’t Know About Evolution Can Kill You

As noted in a previous blog entry, evolution can occur rapidly. Perhaps the best example of how rapidly natural selection can work is the evolution of resistant organisms, such as antibiotic-resistant bacteria. A mutant bacterium that has the ability to resist penicillin will thrive in the body of a person who is taking penicillin. This is because the penicillin has wiped out the bacteria that cannot resist it. The result is a person who is carrying around a culture of resistant bacteria. These bacteria can then spread to other people. This occurs readily when humans are in close contact, such as in hospitals, or overcrowded prisons, or schools. This same mutant bacterium, in the absence of antibiotics, is inferior to the non-resistant bacteria.

Humans have developed many kinds of antibiotics. But for each of these antibiotics, there are populations of bacteria somewhere that have evolved resistance to them. Fortunately, not all bacteria have evolved resistance to all antibiotics. But some populations of bacteria, called “superbugs,” have evolved resistance to several kinds of antibiotics. Many of you, like me, have known someone who became ill or died from a resistant bacterial infection that they acquired in a hospital or nursing home.

It takes only a few years for populations of bacteria to evolve resistance to any particular kind of antibiotic, and it has taken only a few decades for resistance to antibiotics in general to become a major public health problem. Many viruses, such as HIV, have evolved resistance to antiviral medications as well.

In a similar fashion and almost as rapidly, populations of insects have evolved resistance to pesticides used to control them. There are many populations of insects, many of which spread diseases from one human to another, which will no longer die if you spray them. There are populations of disease-carrying rats that cannot be killed by rat poison. Environmentalist Rachel Carson pointed out in 1962 that the overuse of pesticides not only polluted the environment but also proved ultimately useless because of evolution: “If Darwin were alive today the insect world would delight and astound him with its impressive verification of his theories of the survival of the fittest. Under the stress of intensive chemical spraying the weaker members of the insect populations are being weeded out. Now, in many areas and among many species only the strong and fit remain to defy our efforts to control them.”

In all these ways, from the evolution of antibiotic-resistant bacteria to the evolution of pesticide-resistant vermin, agricultural and medical researchers (some of whom are creationists) have had to take evolution into account when developing strategies to control the spread of infectious diseases and pests. Germs and disease vectors are moving targets, and evolution is the reason for this. Evolution happens in hospitals (and down on the farm, too) not over the course of millions of years but over the course of just a few months. What you don’t know about evolution can kill you.

This entry appeared in my book Life of Earth: Portrait of a Beautiful, Middle-Aged, Stressed-Out World, from Prometheus Books.